1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcaataccattgtaaaattgtgacatcttaggtgttttgatcattatgtatttcttttttcttactttattttgtatattaactgaatttccccctgcaatgcagGACCTGAAGCTCCAAAGATCTTCAACTGT
species | Glycine max |
transcript | GLYMA10G05130.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAG GACCTGAAGCTCCAAAGATCTTCAACTGTEST: gi|193704216|gb|FK647480.1|FK647480
genomic: CATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGgtaagcaata ... tgcaatgcagGACCTGAAGCTCCAAAGATCTTCAACTGT
EST: TCCAGGAAACATTGTTTGTCTTGCTCACCCGTGGCATGATCTTGAGATAG GACCTGAAGCTCCAAAGATCTTCAACEST: gi|192331411|gb|FK022716.1|FK022716
genomic: TCCAGGAAACAT-GTT-G-CT-GCTCACCCGTGGCATGATCTTGAGATAGgtaagcaata ... tgcaatgcagGACCTGAAGCTCCAAAGATCTTCAAC
EST: CATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAG GACCTGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGgtaagcaata ... tgcaatgcagGACCTGAAGCTCCAAAGATCTTCAACTGT
tttcttttttcttactttattttgtatattaactgaatttccccctgcaatgcagGACCTGAAGCTCCAAAGATCTTCAACTGT
tattaac putative branch site (score: 1)
tttccccctgc putative PPT
tttttcttactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaataccattgtaaaattgtgacatcttaggtgttttgatcattatgtatttcttttttcttactttattttgtatattaactgaatttccccctgcaatgcagGACCTGAAGCTCCAAAGATCTTCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC