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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagctcgctttaaaatttgatatttagctgtttttgctgttcataaaggacatgcttacgttgtggttctgaattctccttctttcatgctattaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTAGACCCTCATC

Basic information

species Glycine max
transcript GLYMA10G03910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03910.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 2
ttagctcgctttaaaatttgatatttagctgtttttgctgt-tcataaaggacatgcttacgttgtggttctgaattctcctt-ctttcatgctattaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTAGACCCTCATC
 |   | |    | |||  | ||  | ||||| |||   || | | ||| | | |  | | |     |    || || |   |  |||    || || ||||||||||||||||||||| |||||||| |||  |   ||  | |||||| | ||||||||| | |||||||| |||    || |  |||||||   | || 
-tttttaggaagagaatcagctacct-gctgtgttttaagtatgaaaaatggcttcataatgcccctgactagactttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287566|gb|BI471457.1|BI471457
EST:     AAATTCTCGATGGTCCTCCTGGAACTTCAGAAAGAGCT                         GTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTG
genomic: AAATTCTCGATGGTCCTCCTGGAACTTCAGAAAGAGCTgtgagtatac ... ctattaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggacatgcttacgttgtggttctgaattctccttctttcatgctattaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTAGACCCTCATC
        tgcttac  putative branch site (score: 2)
                             ttctccttctttcatg  putative PPT
                                              tattaaaa  TA-rich tract