Sequence
atgc intronic sequence ATGC exonic sequence...acattgatgtaaacttgtgcagtattgaagaaatgttgttaattcactgtttacctgtttatgggctcagcttttatcattttatggttgtttttatcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
Basic information
species | Glycine max |
transcript | GLYMA10G03660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g08400.1 (Oryza sativa), 3'ss of exon 2
------------------------acattgatgtaaacttgtgcagtattgaagaaatgttgttaattcactg--tttacctgtttatgg--gctcagcttttatcattttatggttgttttt--atcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
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gtatgtttaaatgggctgtagctcacataaatacctgatagtttgcttttccc-aactaatgccaaggcactatatttatttctttgtcgtggtgcatgctgagttatatgtctctgactctcaaatcagGTTATTGGGCCATATCGATCTGGAAAATCTTTTCTTCTCAATCAGCTTCTCTCCCTAACATGCAATAAAG
upper sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------acattgatgtaaacttgtgcagtattgaagaaatgttgttaattca------ctgtttacctgtttatg--ggctcagcttttatcattttatggttgtttttatcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
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gtatgtgacagtgatgtttgactcattatcaattcttcgtatgttctttctatctgaacctggttttctcggaccaagatatttgttactttgtttctcacgatttgcttgttatttcctttggtgttgaaatactagGTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTTCTTTCTCTTTCTTGTTATGAAG
upper sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 2
acattgatgtaaacttgtgcagtattgaagaaatgttgttaattcactgtttacctgt-ttatgggctcagctttt-atcattttatggttgtttttatcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
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--tttggttcctagttggggatactttgtgaataatttgtctttagatatttgtttttctttttttctctgtttttgattcaatgttgattgttgtcttcagGTAATTGGTCCATACCGCTCTGGAAAATCTTTTTTGCTCAATCAACTTCTCTCCCTTTCTTGTTATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgtttacctgtttatgggctcagcttttatcattttatggttgtttttatcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
ttgttttt CT-rich tract
ttttatcattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acattgatgtaaacttgtgcagtattgaagaaatgttgttaattcactgtttacctgtttatgggctcagcttttatcattttatggttgtttttatcagGTGATTGGACCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAG
- - tgatgta
- - - - - - -cttgtgc
- - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttt