1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatgcaattcttagaattctgttaaagaaacagaacttgtggacattactagatgcaatatctaagacagacatcataaatatcaatattcacttgtagGCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCATCAGCAGTGCTGGAATCTACAAACCAACAGATGAACCTCCACATGTTGAA
species | Glycine max |
transcript | GLYMA10G03200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTGATGTGGTCTTGGACAACAATGGCAAGGATCTTGGGACTGTGAG GCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCATEST: gi|20498478|gb|BQ273408.1|BQ273408
genomic: GTGTTTGATGTGGTCTTGGACAACAATGGCAAGGATCTTGGGACTGTGAGgtttgttctc ... tcacttgtagGCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCAT
EST: GGATCTTGGGACTGTGAG GCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCAT
genomic: GGATCTTGGGACTGTGAGgtttgttctc ... tcacttgtagGCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCAT
attactagatgcaatatctaagacagacatcataaatatcaatattcacttgtagGCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCATCAGCAGTGCTGGAATCTACAAACCAACAGATGAACCTCCACATGTTGAA
ttcactt CT-rich tract
atcataaatatcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgcaattcttagaattctgttaaagaaacagaacttgtggacattactagatgcaatatctaagacagacatcataaatatcaatattcacttgtagGCCGGTGATTGATTGGGCTAAGAGTTCAGGTGTCAAGCAATTCCTGTTCATCAGCAGTGCTGGAATCTACAAACCAACAGATGAACCTCCACATGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-aatgcaa
- - - - - - - - -ttctgtt
- - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - -acttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - gatgcaa