Sequence
atgc intronic sequence ATGC exonic sequence...aaaacaaaataaacaaatatataattataaaatagataaataaataaatagccttaacttaacatttggaatatactttgtgtggatcaatcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAA
Basic information
species | Glycine max |
transcript | GLYMA10G01450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G01450.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------------aaaacaaaataaacaaatatataattataaaatagataaataaataaatagccttaacttaacatttggaatatactttgtgtggatcaatcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAA
|||| ||||| |||| || | | | | || | | | || | | | | | || | | | || |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||| ||||| | |||| || || ||||| ||||| |||
gtattgtactcacacttgactcatctttttgtttggtatttttatggagcgtttggattgagagaaatgaaaagaaaatgctcaaaaatggtctcactttcttcaactatgttttcttctcatttctcttccttctctcttgctaattttctcatttttgtggatttagGAGTTACTATCGTTGCACCAGTGCATCATGTAATGTGAAGAAACGAGTGGAGAGGTGTTTCAAGGATCCGGCCATTGTCGTAACCACCTACGAAGGTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17963950|gb|BM270693.1|BM270693EST: GTGAAAAATAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: GTGAAAAATAGCCCCTTTCCCAGgtaacatatg ... tcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|33387431|gb|CA850638.1|CA850638EST: AGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAATAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAATAGCCCCTTTCCCAGgtaacatatg ... tcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatagccttaacttaacatttggaatatactttgtgtggatcaatcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAA
acttaac putative branch site (score: 3)
ttaacttaacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaacaaaataaacaaatatataattataaaatagataaataaataaatagccttaacttaacatttggaatatactttgtgtggatcaatcacatgtagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - -aaaataa
- - - aaataaa
- - - - - - - - - - - - - ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - -ccttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg