1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cattgtggaacacaaagtttatgttgcaatacaaattgttggttacttatttctgttgttgtcgctaagaatggcccaccacatgcaattttctgtgcagTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCG
species | Glycine max |
transcript | GLYMA10G00600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAG TATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTAEST: gi|120531130|gb|EH259263.1|EH259263
genomic: CCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAGgtactagcta ... ttctgtgcagTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTA
EST: CCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAG TATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTG
genomic: CCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAGgtactagcta ... ttctgtgcagTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTG
cttatttctgttgttgtcgctaagaatggcccaccacatgcaattttctgtgcagTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCG
ttttctgt CT-rich tract
aattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgtggaacacaaagtttatgttgcaatacaaattgttggttacttatttctgttgttgtcgctaagaatggcccaccacatgcaattttctgtgcagTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - -acacaaa
- - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca