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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatgtattattgtcaagccaaatatattattaatagagcaatataaacatatatatatataccaccaaatatgtgaatcaattaaggtaaaattatttcagcttaatctaataatcatgcatgcgtttaagtcataaatatataattatgttaaatagtgtctgtctgaattttcagCTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGGTCCCACTTCAAGTT

Basic information

species Glycine max
transcript GLYMA09G41450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316239|gb|FK010100.1|FK010100
EST:     TTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTCGTTGCT                         CTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTCGTTGCTgtaagtatat ... gaattttcagCTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACT
EST: gi|254321754|gb|GR825071.1|GR825071
EST:     TTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTCGTTGCT                         CTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTCGTTGCTgtaagtatat ... gaattttcagCTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtttaagtcataaatatataattatgttaaatagtgtctgtctgaattttcagCTTGGTGGAACTACTTGGACTGTACAATTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGGTCCCACTTCAAGTT
                                                ttttc  CT-rich tract
     taagtcataaatatat  TA-rich tract