Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattatatatatatatatatatatatcaaaacgctacacaataattaacataaaacccatatataatgagttactcctagctaggtactaataatttattgaaatatgatctatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCAAACTCAGACTTGCCCCGTTTTGATTTAAGTC

Basic information

species Glycine max
transcript GLYMA09G41440.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295821|gb|FG990873.1|FG990873
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|15199262|gb|BI423742.1|BI423742
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGGAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|151411350|gb|EV281161.1|EV281161
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTACAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192311047|gb|FK004736.1|FK004736
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|16346302|gb|BI971897.1|BI971897
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192326883|gb|FK019190.1|FK019190
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192311048|gb|FK004737.1|FK004737
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|19935574|gb|BQ080496.1|BQ080496
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttactcctagctaggtactaataatttattgaaatatgatctatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCAAACTCAGACTTGCCCCGTTTTGATTTAAGTC
                   tactaat  putative branch site (score: 1)
                                           tctatctctt  putative PPT
                   tactaataatttattg  TA-rich tract