1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgttttggaagttttgtggtatagtaacgtgtctgccttctattgcttgctgtggtgcttgcttaccaaaaaaaaaattgcttgctgttgtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCAC
species | Glycine max |
transcript | GLYMA09G41380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAG GCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCTTCTAGGAAAGCTCTTGEST: gi|192330256|gb|FK020556.1|FK020556
genomic: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcatt ... gtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG
EST: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAG GCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG
genomic: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcatt ... gtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG
gcttgctgtggtgcttgcttaccaaaaaaaaaattgcttgctgttgtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCAC
tgcttac putative branch site (score: 2)
ttaccaaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttttggaagttttgtggtatagtaacgtgtctgccttctattgcttgctgtggtgcttgcttaccaaaaaaaaaattgcttgctgttgtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-tgttttg
- - - - - - ttttgtg
- - - - - - - - - - - - - - - - -ctgcctt
- - - - - - - - - - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa