1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatttgatcatatatgtgtgtgcagtgtgcttgtgtgtgtattatgtgaattttgtatttatctatcattatcaattaatcattttacataaaactatgcttacatccgagaaactagaatttttcttttcttatttagcaaagatccatttagttgagaatttagtctgattgtgatttttctatatgggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTAATATAG
species | Glycine max |
transcript | GLYMA09G40990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTAEST: gi|193365164|gb|FK331433.1|FK331433
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: TGGAATCATTTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTAEST: gi|208195566|gb|GD991243.1|GD991243
genomic: TGGAATCATTT-CAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTAACTAGGTACTTTACCAAGCTTGGATACEST: gi|213595971|gb|DB966274.1|DB966274
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTA-CT-GGT-CTTT-CCAAGCTTGGATAC
EST: CTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTGTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTAEST: gi|208148837|gb|GD944993.1|GD944993
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: TTGGAATCATTTCAGCTGTCAAAGTAACGAAAGAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTEST: gi|207689956|gb|GD673525.1|GD673525
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTT
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTAEST: gi|193629905|gb|FK576025.1|FK576025
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTEST: gi|208304429|gb|GE104356.1|GE104356
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTT
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACAACCTAATGTEST: gi|208076712|gb|GD875641.1|GD875641
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACA-CCTA-TGT
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATEST: gi|208181405|gb|GD974658.1|GD974658
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTAT
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATTCACCTATGTTAEST: gi|213589246|gb|DB957778.1|DB957778
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
gatccatttagttgagaatttagtctgattgtgatttttctatatgggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTAATATAG
gtctgat putative branch site (score: 4)
tgatttttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgatcatatatgtgtgtgcagtgtgcttgtgtgtgtattatgtgaattttgtatttatctatcattatcaattaatcattttacataaaactatgcttacatccgagaaactagaatttttcttttcttatttagcaaagatccatttagttgagaatttagtctgattgtgatttttctatatgggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTAATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT