1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatatattgtgattcattttcttgttttcttttgatgtttgtgttagtcgtcaccgtgatacttctatatatgtaaaatcatttatgtatccattgcaaagtagcatactagttagtttttgtaaagctgttttttttcttcttaaatgcaatcactgagtatggtaaatgattttctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATTATTACAACTGCTATTGGAGGTCGAGACGGACAACCAAAGCGG
species | Glycine max |
transcript | GLYMA09G40150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAG GATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATTEST: gi|13481439|gb|BG510782.1|BG510782
genomic: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAGgtatatattg ... ctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATT
EST: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAG GATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAACTTEST: gi|15814897|gb|BI787172.1|BI787172
genomic: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAGgtatatattg ... ctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATT
EST: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAG GATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATT
genomic: TAAATGAAATGAAGATTGGAGATGACAAAGGCAAAAACAACAATGAGAAGgtatatattg ... ctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATT
tttttttcttcttaaatgcaatcactgagtatggtaaatgattttctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATTATTACAACTGCTATTGGAGGTCGAGACGGACAACCAAAGCGG
ttttctttgt CT-rich tract
taaatgattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatattgtgattcattttcttgttttcttttgatgtttgtgttagtcgtcaccgtgatacttctatatatgtaaaatcatttatgtatccattgcaaagtagcatactagttagtttttgtaaagctgttttttttcttcttaaatgcaatcactgagtatggtaaatgattttctttgtgcagGATATGGAAGCAACTATTGTGAGTGGTAATGGAACAGAAACCGGTGAAATTATTACAACTGCTATTGGAGGTCGAGACGGACAACCAAAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG