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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggaattttggccttccactatgttctgccattgataacactggttgcaaattaattagttcatgcaatgaccatcactcttcactctttaatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG

Basic information

species Glycine max
transcript GLYMA09G40060.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40060.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 3'ss of exon 2
gaggaattttggccttccactatgttctgccattga----taacactggttgcaaattaattagttcatgcaatgac-catcactcttcactctttaatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG
     ||   || |  ||    ||   |   |   |    | |   ||       ||||| |  ||  |    | ||   | |   ||||  |||    ||||||||||||||||||||||||||| | || |||||| | || || ||||| || || || || | | |||||||||||
-----atagggggcacccttagtgcattaaaaaaaaaatctgatgttgaacttgcattaaatcattattattctaacgttttatgtttcatccttctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179034|gb|HO024769.1|HO024769
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|58015330|gb|CX702072.1|CX702072
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACNTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|254324273|gb|GR840590.1|GR840590
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|192323627|gb|FK019038.1|FK019038
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|213589574|gb|DB973217.1|DB973217
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|254343224|gb|GR856928.1|GR856928
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|151394416|gb|EV264287.1|EV264287
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|8403460|gb|BE059094.1|BE059094
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|213617944|gb|DB967306.1|DB967306
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|120492016|gb|EH220183.1|EH220183
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|7686223|gb|AW756934.1|AW756934
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|19348498|gb|BM893030.1|BM893030
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|21888536|gb|BQ741749.1|BQ741749
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|254336245|gb|GR842424.1|GR842424
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|12773457|gb|BG238384.1|BG238384
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|27425936|gb|CA937456.1|CA937456
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|4286616|gb|AI441072.1|AI441072
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|23729522|gb|BU762853.1|BU762853
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|48575471|gb|CO036420.1|CO036420
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|19348375|gb|BM892907.1|BM892907
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|14259242|gb|BG882150.1|BG882150
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|254335608|gb|GR847136.1|GR847136
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|23057464|gb|BU578138.1|BU578138
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|7691181|gb|AW759313.1|AW759313
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
EST: gi|213607370|gb|DB967079.1|DB967079
EST:     ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC
genomic: ATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggtt ... taatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaaattaattagttcatgcaatgaccatcactcttcactctttaatttgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG
                              tcactcttcactcttt  CT-rich tract
     aattaattagttcat  TA-rich tract