1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttttggtgtcaaatagtgttgaagaagaaatgggggcatgatcatttggtttgccttcaatttttgcaatgttgggttttatcttttccttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCA
species | Glycine max |
transcript | GLYMA09G39130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCGEST: gi|208106303|gb|GD905980.1|GD905980
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGACGCTGCAEST: gi|207732718|gb|GD704811.1|GD704811
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCG
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
tttggtttgccttcaatttttgcaatgttgggttttatcttttccttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCA
ttttatcttttccttc CT-rich tract
ttttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttggtgtcaaatagtgttgaagaagaaatgggggcatgatcatttggtttgccttcaatttttgcaatgttgggttttatcttttccttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - tggtgtc
- - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg