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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagtctctgattcttaactttaggatttatttttcatttatttatgtttcatttggttttgtggattttgtcgttttgttgattgtgctgtggtgttgctggttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAGACTTACGATGCGGGTTCTCCTAAGGTCACGATATATATTGTGACCGAGCCTG

Basic information

species Glycine max
transcript GLYMA09G38740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591468|gb|DB959926.1|DB959926
EST:     AGGACGGTCACTTAGCTGCCGCGCGCAACGGCGTCAAGCGTCTCCGAACT                         GTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAGACT
genomic: AGGACGGTCACTTAGCTGCCGCGCGCAACGGCGTCAAGCGTCTCCGAACTgtgagttagt ... tggttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttgtggattttgtcgttttgttgattgtgctgtggtgttgctggttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAGACTTACGATGCGGGTTCTCCTAAGGTCACGATATATATTGTGACCGAGCCTG
                      tgttgat  putative branch site (score: 4)
                                                ttttc  putative PPT
          attttgt  TA-rich tract