1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttgttactgtgatgtatatggtcaaaagtaactatcttgctgtattgttggtacttttcatatagttacctgatagttttttctttgaaaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG
species | Glycine max |
transcript | GLYMA09G38650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTG GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGEST: gi|8286009|gb|BE023497.1|BE023497
genomic: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatcct ... aaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
EST: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTACCAGGAAGCTG GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGEST: gi|9819702|gb|BE555215.1|BE555215
genomic: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatcct ... aaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
EST: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTG GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGEST: gi|254331899|gb|GR846209.1|GR846209
genomic: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatcct ... aaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
EST: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTG GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGEST: gi|7591429|gb|AW707162.1|AW707162
genomic: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatcct ... aaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
EST: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTG GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
genomic: GTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatcct ... aaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAG
attgttggtacttttcatatagttacctgatagttttttctttgaaaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG
acctgat putative branch site (score: 4)
ttttttctttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgttactgtgatgtatatggtcaaaagtaactatcttgctgtattgttggtacttttcatatagttacctgatagttttttctttgaaaactatcagGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG
- - gttactg
- - - - - -tgatgta
- - - - - - - - - - - - -aaaagtaa
- - - - - - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - gttggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgata