1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacgttctctctcatacactctaaattaaacgcctaatgatgccactctgttgtggctagtgctgtacgttttatctctctgttcgttgtttctcagatattattgtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACTGACACTGAGGTCATTCCCAAGCTTGCAAAGTTTGTTTATGACAAGGCGA
species | Glycine max |
transcript | GLYMA09G38460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG GTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACTEST: gi|298173459|gb|HO016795.1|HO016795
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG GTTTTGAAGGAAACGCTGCTCCGACATGGTTTCACCTTTGAATCTGAAACTEST: gi|213620145|gb|DB965423.1|DB965423
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG GTTTTGAAGGAAACGCCGCTCCGACATGGCTTCACCTTTGAATCTGAAACTEST: gi|209696470|gb|BW664019.1|BW664019
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG GTTTTGAAGGAAACGCCGCTCCGACATGGCTTCACCTTTGAATCTGAAACTEST: gi|213618097|gb|DB965254.1|DB965254
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG GTTTTGAAGGNAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAGACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
tgctgtacgttttatctctctgttcgttgtttctcagatattattgtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACTGACACTGAGGTCATTCCCAAGCTTGCAAAGTTTGTTTATGACAAGGCGA
agatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgttctctctcatacactctaaattaaacgcctaatgatgccactctgttgtggctagtgctgtacgttttatctctctgttcgttgtttctcagatattattgtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACTGACACTGAGGTCATTCCCAAGCTTGCAAAGTTTGTTTATGACAAGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG