Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgtcattttgaaaaaaaaaaagaagtcatttttgaaggggtattggattgatcaaattttgattggtaactttgtgaattgtctgtttgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 2
--gcttgtcattttgaaaaaaaaaaagaagtcatttttgaaggggtattggattgatcaaattttgattggtaactttgtgaattgtctgtttgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG
  | | |   |  |   |  |  ||| | |   | ||  |   |||   || |  ||  ||| |||| | | | |||  |    | | |||        |||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||| |||
taggtagaagtcattgcagtatgaaaaaggctttgttaaacatggttggggctctatataatattgactagaatcttcct--cctttatgtgcacatcacagAGTACAGAACTGTCTCTGGAGTCGCTGGGCCATTGGTTATCCTTGAGAAAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723248|gb|BW675195.1|BW675195
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|298183011|gb|HO028274.1|HO028274
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|213617416|gb|DB965231.1|DB965231
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|6567285|gb|AW234896.1|AW234896
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|5342420|gb|AI794704.1|AI794704
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|213607123|gb|DB967000.1|DB967000
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|10709431|gb|BF009155.1|BF009155
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAA
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGAT-AAA
EST: gi|213592755|gb|DB957813.1|DB957813
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: gi|213602215|gb|DB958475.1|DB958475
EST:     GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG                         AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggattgatcaaattttgattggtaactttgtgaattgtctgtttgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG
                     tggtaac  putative branch site (score: 2)
                                       tctgttt  putative PPT
        atcaaattttgatt  TA-rich tract