1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaattaagttgtttatccaaatacatccctaagtagtgatgagcattgagcaatatgccttgtattatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG
species | Glycine max |
transcript | GLYMA09G37360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACEST: gi|5175487|gb|AI759820.1|AI759820
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|21600798|gb|BQ611129.1|BQ611129
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAATEST: gi|31460083|gb|CD402111.1|CD402111
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|33388640|gb|CA851847.1|CA851847
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|26059008|gb|CA801922.1|CA801922
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|41146454|gb|CK606665.1|CK606665
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|193577122|gb|FK536569.1|FK536569
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTEST: gi|151395042|gb|EV264913.1|EV264913
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGT
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|192328957|gb|FK019684.1|FK019684
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: GGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|16104974|gb|BI892714.1|BI892714
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|192309351|gb|FK000559.1|FK000559
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|23732890|gb|BU764623.1|BU764623
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|254349282|gb|GR860080.1|GR860080
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|192328154|gb|FK020415.1|FK020415
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACEST: gi|193538075|gb|FK494606.1|FK494606
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
EST: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGG ATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
genomic: AGAGAGCAAGTGGACCTAAGTGCCCTGTCACTGGCAAGAGGATCCAAGGGgtatgtagtg ... taatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAAC
attgagcaatatgccttgtattatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG
tattatcatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattaagttgtttatccaaatacatccctaagtagtgatgagcattgagcaatatgccttgtattatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - -atccaaa
- - - - - - - - - - - -acatccc
- - - - - - - - - - - - - - - - - - -tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgact