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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgcatgcacttctatggtttagacaaaatggtctttctttcaccttcgtatatgcttgcttaaacctctctttttttcgcactgttaattgttgcagGTCAAGAAGATGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGA

Basic information

species Glycine max
transcript GLYMA09G36250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402485|gb|EV272298.1|EV272298
EST:     AATGGAGGAACTTCAAGGGTCTCAAACCCAATCATCGCTCG                         GTCAAGAAGATGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAG
genomic: AATGGAGGAACTTCAAGGGTCTCAAACCCAATCATCGCTCGgtaatttgca ... attgttgcagGTCAAGAAGATGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAG
EST: gi|193623885|gb|FK572925.1|FK572925
EST:     AAACCCAATCATCGCTCG                         GTCAAGAAGATAGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAA
genomic: AAACCCAATCATCGCTCGgtaatttgca ... attgttgcagGTCAAGAAGAT-GAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcgtatatgcttgcttaaacctctctttttttcgcactgttaattgttgcagGTCAAGAAGATGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGA
                                        tgttaat  putative branch site (score: 3)
                          tcttttttt  TA-rich tract