1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gattctgtgtgtttctagtggttttatatgttttgtcagtctagtgttttgtttgtttgactttggtcttctgtcataaatggtgtttttttttttgcagGTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGATGAATCCGAAATTGAATGTCACCAGCAACTTCAAAAGTTGTACACTTCGA
species | Glycine max |
transcript | GLYMA09G34950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGGAAGCAAGCAAGTAAATTGAGGGAGCAAGTTGCCAGGCAACAGCAG GTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGATEST: gi|151395193|gb|EV265064.1|EV265064
genomic: TAAGGAAGCAAGCAAGTAAATTGAGGGAGCAAGTTGCCAGGCAACAGCAGgtcatcattc ... ttttttgcagGTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGAT
EST: AAGGAAGCAAGCAAGTAAATTGAGGGAGCAAGTTGCCAGGCAACAGCAG GTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGAT
genomic: AAGGAAGCAAGCAAGTAAATTGAGGGAGCAAGTTGCCAGGCAACAGCAGgtcatcattc ... ttttttgcagGTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGAT
gttttgtttgtttgactttggtcttctgtcataaatggtgtttttttttttgcagGTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGATGAATCCGAAATTGAATGTCACCAGCAACTTCAAAAGTTGTACACTTCGA
gtttgac putative branch site (score: 4)
tgtttttttttttgc putative PPT
ataaatggtgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattctgtgtgtttctagtggttttatatgttttgtcagtctagtgttttgtttgtttgactttggtcttctgtcataaatggtgtttttttttttgcagGTTATACTTAGACAGTTGGGCCAAATTAGCAATGAACCGCTCATGATTGATGAATCCGAAATTGAATGTCACCAGCAACTTCAAAAGTTGTACACTTCGA
- - -tgtgtgt
- - - - - - - - agtggtt
- - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg