Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

Basic information

species Glycine max
transcript GLYMA09G34760.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                         |  || | |            | |      |  |      || |  |  |||   ||  | ||| | |   |   |    ||  | ||  | | || | ||||||| |||||||| ||||||||||| |||||| | || ||  |||| |||||  | |||||||| ||  | ||||||||||| |||||||||||   |||
-----------------------------------------agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatc--atcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG

upper sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtctt--ttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtat-tcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                            |||  |  |  | ||  |   |  |  ||||| ||    ||   ||    |  ||  |||||| ||    | | |   |   ||||     | | | | |||||||||| ||||| |||||||||||||||||| | || || ||||| |||||  | |||||||| ||  | || ||||| || |||||||||||    ||
--------------------------------------------tactataatgatattgatgaaggaaccaagatgaatg--ttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG

upper sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                       ||   | |  ||     |  ||||  |    |  |   |    | |  |  |  | ||| || ||   |  | | |    ||   ||| | |  |||| | |||||||||| ||||| |||||||||||||||||  | || || ||||| |||||  | |||||||| ||  | || ||| | || |||||||||||   |||
---------------------------------------gttgcttctttgccgaccacttgttatgtgtaatttctcc--cttatct--ttctcatgattactaacagctttctactttgaccctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG

upper sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 1
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                  |  |  |   |   ||   |||||||| | ||   || ||    |   ||   |  ||||  |   ||   |||| |         |||  |  ||      ||| ||||| | |||||||||||||||||||| |||||  | || || | |||||| ||  | ||  |||| ||||| ||||||||||| |||||||||||||| ||
----------------------------------tcatgtttgattttgt-ccagtcttttatattttgaatatttgtaccatgtgatgctattt-taactgagcttaaattg-------gtttttcatgaaaccatctccagCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021889|gb|BM092923.1|BM092923
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|193419084|gb|FK385268.1|FK385268
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAG
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAG
EST: gi|58022980|gb|CX709721.1|CX709721
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|10232707|gb|BE801595.1|BE801595
EST:     GGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: GGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|298174123|gb|HO017459.1|HO017459
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|15337650|gb|BI498306.1|BI498306
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|207728942|gb|GD708742.1|GD708742
EST:     TGTGAAGACTTGGTTCAATTAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192314938|gb|FK010756.1|FK010756
EST:     AGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAATATATTCCCCAGACCTACGGCTGGACCTC
genomic: AGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|58014722|gb|CX701464.1|CX701464
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|21994666|gb|BQ786194.1|BQ786194
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|4313307|gb|AI460426.1|AI460426
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|21994589|gb|BQ786117.1|BQ786117
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|193572958|gb|FK532481.1|FK532481
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCTAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|58014623|gb|CX701365.1|CX701365
EST:     GTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: GTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209707172|gb|BW656790.1|BW656790
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|208262966|gb|GE061546.1|GE061546
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|208145647|gb|GD942740.1|GD942740
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|207730393|gb|GD708849.1|GD708849
EST:     TGTGAAGACTTGGTTCAATCGGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|14991504|gb|BI317177.1|BI317177
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|18730580|gb|BM525958.1|BM525958
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|13311686|gb|BG405337.1|BG405337
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9902923|gb|BE611891.1|BE611891
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|13481580|gb|BG510923.1|BG510923
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9898907|gb|BE607875.1|BE607875
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9899177|gb|BE608204.1|BE608204
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
               ttttaat  putative branch site (score: 3)
                                             tattcttc  putative PPT
               ttttaattctttgaaa  TA-rich tract