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gtatatataagctgattataaatgatatcatcatttataattcatgtttcatgcaatagacttttggatttgacacatgtaacattgagcttattccaatgcacttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTGAGCTTGAAAAAGCTAGACAATGGAAG
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGACACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|193605296|gb|FK558136.1|FK558136
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|193422559|gb|FK390172.1|FK390172
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: TCTTTAGACCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208315715|gb|GE114785.1|GE114785
genomic: TCTTT-G-CCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGACCCTGAGATTGCTGATATAATTEST: gi|193518136|gb|FK473551.1|FK473551
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAAEST: gi|193401889|gb|FK367094.1|FK367094
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAA
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208248208|gb|GE050762.1|GE050762
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208102749|gb|GD897490.1|GD897490
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCEST: gi|193721890|gb|FK659438.1|FK659438
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCC
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208341502|gb|GE137070.1|GE137070
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAAATEST: gi|193515317|gb|FK472879.1|FK472879
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAA-T
EST: AAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208165341|gb|GD964449.1|GD964449
genomic: AAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATEST: gi|208303241|gb|GE101062.1|GE101062
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATAT
EST: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208046547|gb|GD849103.1|GD849103
genomic: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGTTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|193730758|gb|FK666138.1|FK666138
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGTAGGTTEST: gi|208172749|gb|GD969352.1|GD969352
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTG-AGGTT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|207808489|gb|GD777662.1|GD777662
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208165683|gb|GD964133.1|GD964133
genomic: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|193540875|gb|FK496051.1|FK496051
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTTCGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|193636308|gb|FK584009.1|FK584009
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208178075|gb|GD975732.1|GD975732
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|207833163|gb|GD801382.1|GD801382
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208286694|gb|GE085268.1|GE085268
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208325102|gb|GE124020.1|GE124020
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTEST: gi|208138614|gb|GD939746.1|GD939746
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
acttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTGAGCTTGAAAAAGCTAGACAATGGAAG
taattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatataagctgattataaatgatatcatcatttataattcatgtttcatgcaatagacttttggatttgacacatgtaacattgagcttattccaatgcacttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTGAGCTTGAAAAAGCTAGACAATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG