1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaattaattgagcagtgaatgcatttcaattttcaagtgacttttacgggcttgtggatgttgattttgtattttattattttctcctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGAAACCTTATGTTGAATCAAATAAGCCAA
species | Glycine max |
transcript | GLYMA09G33160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGEST: gi|18734891|gb|BM528445.1|BM528445
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGEST: gi|19053956|gb|BM732623.1|BM732623
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGEST: gi|15288236|gb|BI472127.1|BI472127
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGEST: gi|308098228|gb|HO759969.1|HO759969
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGEST: gi|120534087|gb|EH262220.1|EH262220
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
EST: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACT CCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
genomic: TAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTGCAACATGAAACTgtaagaatta ... cctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGG
cttttacgggcttgtggatgttgattttgtattttattattttctcctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGAAACCTTATGTTGAATCAAATAAGCCAA
tgttgat putative branch site (score: 4)
ttttattattttctcc putative PPT
atgttgattttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattaattgagcagtgaatgcatttcaattttcaagtgacttttacgggcttgtggatgttgattttgtattttattattttctcctcgtttagCCTACATCACAGCTTTCTGAAATATGGTCACCTCTGGAAAGCCAAGGATGGAAACCTTATGTTGAATCAAATAAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA