Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagagttatgaccactttttcttttcttggcaaattctgcaagtcttttcagttagttgcatttcttaatcaccccttgttttaaataagtgatttttccccctcactgtaatgttttgacagCATTGAAGAAGCCCAAGCTTCTCATATTTATACCTACAAACATGGTTTCAGAGGCTTTGCAGCCAAACTCAGTGATGAACAGGCTTCCCAAATTTCTA

Basic information

species Glycine max
transcript GLYMA09G32760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704059|gb|BW673659.1|BW673659
EST:     GATATTCTGAAGGAAAATCATCAAATTCTTGCTTCTGTTCATAGTGGAAG                         CATTGAAGAAGCCCAAGCTTCTCATATTTATACCTACAAACATGGTTTCAG
genomic: GATATTCTGAAGGAAAATCATCAAATTCTTGCTTCTGTTCATAGTGGAAGgtcagagtta ... gttttgacagCATTGAAGAAGCCCAAGCTTCTCATATTTATACCTACAAACATGGTTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaccccttgttttaaataagtgatttttccccctcactgtaatgttttgacagCATTGAAGAAGCCCAAGCTTCTCATATTTATACCTACAAACATGGTTTCAGAGGCTTTGCAGCCAAACTCAGTGATGAACAGGCTTCCCAAATTTCTA
                                ccctcac  putative branch site (score: 3)
        ttgttttaaataagtg  TA-rich tract