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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaccctttattgaacctttactgatgtacttcaggttgtttatatgatatctgttaattccatttttttttttttgtgaaacatagcatctatggtcttcaatcatggtgatttattaaccatgctgttttaaatgcctgatagATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGCTTTCTTTACCGCATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGG

Basic information

species Glycine max
transcript GLYMA09G32510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715803|gb|BW657438.1|BW657438
EST:     CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAG                         ATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC
genomic: CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAGgtatgcaccc ... tgcctgatagATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC
EST: gi|213598535|gb|DB964213.1|DB964213
EST:     CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAG                         ATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC
genomic: CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAGgtatgcaccc ... tgcctgatagATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC
EST: gi|209722262|gb|BW662407.1|BW662407
EST:     CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAG                         ATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC
genomic: CACTCCTTCGAGAGATAATTCAAACATGGAGGACATGGAAGAAAACTCAGgtatgcaccc ... tgcctgatagATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatggtcttcaatcatggtgatttattaaccatgctgttttaaatgcctgatagATCTTTTAGACATCGGCCTGGACAAGGGAACATCAAATCCTTCATTGATGCTTTCTTTACCGCATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGG
                        tattaac  putative branch site (score: 1)
                   tgatttattaa  TA-rich tract