1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttacctgtttatggataaagttatccaaacatgaccttattatgagcctgattgtcgctagagtggcattcattgcgtttgttattttgcttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTGTTCCATATTGCTTACCCTAGTGCACCCGAGGCGGTGAAGACTGAACTGA
species | Glycine max |
transcript | GLYMA09G31760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAGTTTAAG AGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTEST: gi|208193387|gb|GD990326.1|GD990326
genomic: ATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAG-TTAAGgtagtatatg ... cttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTT
EST: TGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTTAGTTAAG AGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTGEST: gi|213617759|gb|DB959371.1|DB959371
genomic: TGAGAGAGCAAGACTTGGTTGAATACTTGATTCC-TTTAGTTAAGgtagtatatg ... cttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTG
EST: CTCAGATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAGTTAAG AGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTGEST: gi|209716636|gb|BW679545.1|BW679545
genomic: CTCAGATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAGTTAAGgtagtatatg ... cttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTG
EST: CTCAGATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAGTTAAG AGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTA
genomic: CTCAGATGAGAGAGCAAGACTTGGTTGAATACTTGATTCCTTTAGTTAAGgtagtatatg ... cttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTG
agcctgattgtcgctagagtggcattcattgcgtttgttattttgcttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTGTTCCATATTGCTTACCCTAGTGCACCCGAGGCGGTGAAGACTGAACTGA
gcctgat putative branch site (score: 4)
ttttgctt putative PPT
tttgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacctgtttatggataaagttatccaaacatgaccttattatgagcctgattgtcgctagagtggcattcattgcgtttgttattttgcttgttgtagAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCATCGTGTGGTTTGTTCCATATTGCTTACCCTAGTGCACCCGAGGCGGTGAAGACTGAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - cctgttt
- - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtttg