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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtttattatttttttaaaagggttttaatgttgtgtttttgtttatgtctttgtgtgtttcaattatgattatgagtctgtgtgtctgtttctcttgatcattttttttctttctttgttctttttggttaattggaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT

Basic information

species Glycine max
transcript GLYMA09G29810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 2
gtactgtttattatttttttaaaagggttttaatgttgtgtttttgtttatgtctttgtgtgtttcaattatgattatgagtctgtgtgtctgtttctcttgatcattttttttctttctttgttctttttggttaattggaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                 | |||||| | ||| | | ||| | | | ||| | ||   | | | | ||||                ||  |||||  || |   | || |  | ||      |||      |  ||||||| ||||||||||| |||||| |||||||   |||||||||||| || || ||||| || ||||| || || || |||||  | ||  ||| ||| |
--------------------------------gttttgtgtctctgtctctctctctctct-tttgagtttaaaatgtaattctgaacacgaaaaga----gaggattttgattttcgttgtggtactgtt------ttg------tgtagGCTCAACATGAGAGAGCAGATAATAGTGCACTAAAGGCAGAGAATGATAAAATTCGTTGCGAAAACATTGCTATTAGAGAAGCTCTCAAGCATGCTATAT

upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 2
gtactgtttattatttttttaaaagggttttaatgttgtgtttttgtttatgtctttgtgtgtttcaattatgattatgagtctgtgtgtctgtttctcttgatcattttttttctttctttgttctttttggttaattggaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                  ||   | || || ||||     |||| |||||  | ||  ||    |  | ||  | || |  ||||    ||||  || ||   ||  || | |    | |     | |  || |||| || || |||||||||||||| ||||| || || |  ||||| || ||||| |||||||| ||||||||||| || || ||  | || ||||| || |
----------------------------------gtaaggcttgtgcttattctcgtgtgagtttc--tcattctt----gcttctggttatgctattctt----atttagttgctgatttccttgtatgcactca--cacacctttttagGCCCAACACGAGAGAGCTGATAACTGTGCTCTTCGTGTGGAGAACGATAAGATCCGTTGTGAAAACATAGCCATTAGAGAGGCTCTCAAGAATGTGATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgatcattttttttctttctttgttctttttggttaattggaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                   ggttaat  putative branch site (score: 4)
         attttttttctttctt  TA-rich tract