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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggacatggtcacccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttgaatggttatgacctcacatttttgaaaacattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGTCTTCCTTATTCATTAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCT

Basic information

species Glycine max
transcript GLYMA09G26610.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26610.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G07250.1 (Arabidopsis thaliana), 3'ss of exon 2
atggacatggtcacccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttg--aatggttatgacctcacatttttgaaaacattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGTCTTCCTTATTCATTAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCT
         ||   | ||||||  |  || |   |   || |  |  |    || | || |||  |    |    | ||    || ||||||   ||  |||| || || ||| | || ||| | || || ||| | || ||||||||| |||| || || || || ||||||| |||||||||||| ||||||||||||||
---------gtatgcaatttgggtggatttagtcttcattcttctagttgtgttattctgttgctagaaatctgaatcttggtttcttgaaa---ttttcagTTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306335|gb|FG995115.1|FG995115
EST:     GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTG                         TGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTGCTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttct ... acattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT
EST: gi|120532800|gb|EH260933.1|EH260933
EST:     GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTAAG                         TGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttct ... acattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaaattttgcttttgaatggttatgacctcacatttttgaaaacattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGTCTTCCTTATTCATTAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCT
                            acctcac  putative branch site (score: 3)
                                   atttttgaaaacatt  TA-rich tract