1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagtttatatgaaatatcaaataactcttctaatgttggttgtggagatgatcttaatccttttttattttttatatctatatttaacatatttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACACATGAAAGTAAGAAACAAGGAAGAATTGTTAATGTCTCCTCACAGGGTCA
species | Glycine max |
transcript | GLYMA09G25070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGTCTGAAGATAACATCGAACTACAATTTGCCACAAATCATATAG GTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACACEST: gi|207817435|gb|GD789368.1|GD789368
genomic: CATGCTGTCTGAAGATAACATCGAACTACAATTTGCCACAAATCATATAGgtatgtagaa ... atttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACAC
EST: CATGCTGTCTGAAGATAACATCGAACTACAATTTGCCACAAATCATATAG GTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACACEST: gi|58022034|gb|CX708775.1|CX708775
genomic: CATGCTGTCTGAAGATAACATCGAACTACAATTTGCCACAAATCATATAGgtatgtagaa ... atttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACAC
EST: ACAAATCATATAG GTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACAC
genomic: ACAAATCATATAGgtatgtagaa ... atttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACAC
agatgatcttaatccttttttattttttatatctatatttaacatatttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACACATGAAAGTAAGAAACAAGGAAGAATTGTTAATGTCTCCTCACAGGGTCA
atttaac putative branch site (score: 3)
ttaatccttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttatatgaaatatcaaataactcttctaatgttggttgtggagatgatcttaatccttttttattttttatatctatatttaacatatttcaacagGTCATTTTCTTTTAACAAATCTGTTATTGGATACTATGAAGAAAACAACACATGAAAGTAAGAAACAAGGAAGAATTGTTAATGTCTCCTCACAGGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC