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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacttatataacacaacctcttgtacaaaatctccttttctctcttttccatttaaacttcaaatgctatctattgttattcttgtgccaattgaacttcaaacaatctcttaaaagtgatttttcttcttggaacagGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGATGGATTTAAGTCAACTGGAATTCCAAGTGCTATGTGGGACTTAATGGAGC

Basic information

species Glycine max
transcript GLYMA09G24940.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724053|gb|BW654507.1|BW654507
EST:     TAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGAGAAG                         GTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAT
genomic: TAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGAGAAGgtaaaactta ... cttggaacagGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgccaattgaacttcaaacaatctcttaaaagtgatttttcttcttggaacagGTCTCATATGCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGATGGATTTAAGTCAACTGGAATTCCAAGTGCTATGTGGGACTTAATGGAGC
                                  tgatttttcttctt  CT-rich tract
                           ttaaaagtgattttt  TA-rich tract