1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttcttattacattctaatcttggtattcctagacatacaatgaataatttttttatgtgaaatattggatttaacctttcaattatttgttgtttcagTCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG
species | Glycine max |
transcript | GLYMA09G24450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTATACTGGAAATGACACCTTATTTGAGTCAACTGGACTTTATGGGGAG TCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG
genomic: TTTATACTGGAAATGACACCTTATTTGAGTCAACTGGACTTTATGGGGAGgtaatattga ... gttgtttcagTCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG
ataatttttttatgtgaaatattggatttaacctttcaattatttgttgtttcagTCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG
atttaac putative branch site (score: 3)
ttgtttc putative PPT
ttttttatgtgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttattacattctaatcttggtattcctagacatacaatgaataatttttttatgtgaaatattggatttaacctttcaattatttgttgtttcagTCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG
- - - - -tacattc
- - - - - - - - - - - - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttca