Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattgaatatgttttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT

Basic information

species Glycine max
transcript GLYMA09G15680.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15680.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G156673_T02 (Zea mays), 3'ss of exon 1
ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattg-aatatgttttttatttatt-cagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT
 | |  ||   ||||||  |  |  | |       || || | ||||  |  ||     ||   || |||     |||  || || |  |  | | || |||||| |||||||| ||||| ||  | |||||||| ||||| || |||||||| |||||||| |||||||||||||| ||  | || || ||||||||||| 
gtcatgtgcttttgatatgg--gaaactatagctcaatatatagcttacatgttgggtcgtgagatgtgaaactgttgtgatgtgctgctattgtcttgcagTGGACCCCGTGAGGATGCCACCCGTATTGGTTCCGCTGGTGTTGTGAGGAGGCAGGCCGTGGATATCTCACCCCTGAGGAGGGTGAACCAGGCCATCTAC

upper sequence: GLYMA09G15680.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G078985_T01 (Zea mays), 3'ss of exon 2
ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattgaa---tatgtt--ttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT
 | |  || |  ||| | |||     |  |  |  ||| | ||| ||  | || |  |   || |  || |  | | |     | || |  | || | | | |||||| || ||||| ||||| ||  | |||||||| ||||| || ||||| || ||||| || |||||||||||||| ||| | || || ||||||||||| 
-ttatgtg-ctatgaga-tgtca-actataactcaaac-tattgattacacatgttggctcttgagatgtcaaactggtgttctgtgctgatattgtctttgcagTGGACCACGTGAGGATGCCACCCGTATTGGTTCAGCTGGTGTTGTGAGAAGGCAGGCTGTGGATATCTCACCCCTGAGAAGGGTGAACCAGGCCATCTAC

upper sequence: GLYMA09G15680.2 (Glycine max), 3'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 3'ss of exon 3
ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattgaatatgttttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT
                                       |   ||| | | || ||  ||||  |  |   || |||     |  ||  |  ||   ||||||||| ||||||||||| ||  |||| ||||| ||||| ||||||||| | ||||| ||||||||||| || ||  | || || ||||| ||||| || 
--------------------------------------gtagagctat-agatctctttgttacaacttcattgatttttcgtccttcctgcttg--cagTGGTCCTCGTGAAGATGCTACACGAATCGGTTCCGCTGGTGTGGTGAGGCGTCAGGCTGTTGATATCTCGCCTCTGCGTCGCGTGAATCAAGCCATTTAC

upper sequence: GLYMA09G15680.2 (Glycine max), 3'ss of exon 2
lower sequence: EFJ16239 (Selaginella moellendorffii), 3'ss of exon 3
ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattgaatatgttttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT
                                       |   ||| | | || ||  ||||  |  |   || |||     |  ||  |  ||   ||||||||| ||||||||||| ||  |||| ||||| ||||| ||||||||| | ||||| ||||||||||| || ||  | || || ||||| ||||| || 
--------------------------------------gtagagctat-agatctctttgttacaacttcattgatttttcgtccttcctgcttg--cagTGGTCCTCGTGAAGATGCTACACGAATCGGTTCCGCTGGTGTGGTGAGGCGTCAGGCTGTTGATATCTCGCCTCTGCGGCGCGTGAATCAAGCCATTTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327535|gb|FK020610.1|FK020610
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGACGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|254343590|gb|GR857346.1|GR857346
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|17153000|gb|BM142933.1|BM142933
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|19269574|gb|BM885830.1|BM885830
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|5820242|gb|AI988448.1|AI988448
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6566945|gb|AW234575.1|AW234575
EST:     CTCACTGACCTGAACCCAATTCATGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCACGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6718916|gb|AW306563.1|AW306563
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|9203832|gb|BE330056.1|BE330056
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|18039672|gb|BM307966.1|BM307966
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6725529|gb|AW309928.1|AW309928
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|24135960|gb|BU926470.1|BU926470
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|208188566|gb|GD984776.1|GD984776
EST:     TCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: TCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|21677321|gb|BQ629672.1|BQ629672
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|192312332|gb|FK005336.1|FK005336
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAATGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|16996956|gb|BM086328.1|BM086328
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|207745772|gb|GD720984.1|GD720984
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6724941|gb|AW309340.1|AW309340
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|31467470|gb|CD409498.1|CD409498
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6566480|gb|AW234125.1|AW234125
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|214009848|gb|DB987992.1|DB987992
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TTTTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|192332359|gb|FK026024.1|FK026024
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|254328132|gb|GR835097.1|GR835097
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|192311061|gb|FK004428.1|FK004428
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATTAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|5761429|gb|AI966788.1|AI966788
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|193409077|gb|FK372437.1|FK372437
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|193396420|gb|FK362776.1|FK362776
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6846825|gb|AW349115.1|AW349115
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|31306759|gb|CD391962.1|CD391962
EST:     CTCACTGACCTGAACCCNATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|58023841|gb|CX710582.1|CX710582
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|254343589|gb|GR857345.1|GR857345
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6718793|gb|AW306440.1|AW306440
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|19348990|gb|BM893522.1|BM893522
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|193362473|gb|FK325311.1|FK325311
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGA
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAA-GATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGA
EST: gi|192311060|gb|FK004427.1|FK004427
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATTAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|17023175|gb|BM094209.1|BM094209
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|208331426|gb|GE129003.1|GE129003
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|16105889|gb|BI893629.1|BI893629
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|51334878|gb|CO978744.1|CO978744
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|209715041|gb|BW650892.1|BW650892
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|4285601|gb|AI440927.1|AI440927
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|209709871|gb|BW657269.1|BW657269
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|6095180|gb|AW119847.1|AW119847
EST:     CTCACTCACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|14259052|gb|BG881960.1|BG881960
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|31456812|gb|CD398840.1|CD398840
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|58023313|gb|CX710054.1|CX710054
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|207789383|gb|GD759835.1|GD759835
EST:     TCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: TCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|31463564|gb|CD405592.1|CD405592
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|15287563|gb|BI471454.1|BI471454
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|9899042|gb|BE608010.1|BE608010
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|31476291|gb|CD418319.1|CD418319
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|17519781|gb|BM188823.1|BM188823
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|17153708|gb|BM143641.1|BM143641
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|12488659|gb|BG042182.1|BG042182
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
EST: gi|12774060|gb|BG238995.1|BG238995
EST:     CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAG                         TGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG
genomic: CTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgatatg ... atttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaatttcagtgttttatttgacttaattgaatatgttttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT
                        acttaat  putative branch site (score: 4)
                                       ttttttatttattc  putative PPT
             tgttttatttgactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaaaatggccttgatactgttgtgattcagttgtaacatgttgcttttaaatttcagtgttttatttgacttaattgaatatgttttttatttattcagTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTAT

- - - -ggccttg
- - - - - - - - actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagtg