1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgatacattgaggtcccctcttaagatttcaatgtcatattatgaaattgtgctaggcatcttattaattagtttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
species | Glycine max |
transcript | GLYMA09G09430.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|14125570|gb|BG790008.1|BG790008
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: GCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|254348661|gb|GR852340.1|GR852340
genomic: GCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
gaaattgtgctaggcatcttattaattagtttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
tattaat putative branch site (score: 2)
atcttattaattagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatacattgaggtcccctcttaagatttcaatgtcatattatgaaattgtgctaggcatcttattaattagtttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG