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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcatttctgctatgtgtatttcgttattttcttcaatgtttgcttggttttacttgtgatattgaatctaattctgctgtgacccacacttgtttcttctgaatttttttttctctttcccttttggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG

Basic information

species Glycine max
transcript GLYMA09G08830.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590846|gb|FK548191.1|FK548191
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207761416|gb|GD733759.1|GD733759
EST:     AAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|38193501|gb|CF922707.1|CF922707
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|193339835|gb|FK303222.1|FK303222
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207794735|gb|GD764822.1|GD764822
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAA
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAA
EST: gi|193702686|gb|FK638726.1|FK638726
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207713196|gb|GD697180.1|GD697180
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacccacacttgtttcttctgaatttttttttctctttcccttttggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG
            tttcttctgaattttt  CT-rich tract
                     aatttttttttctctt  TA-rich tract