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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctttttctttgttttttttttaatttttaaattttagaaattttattttggtgtttcacggtacgagttttttttttttgaaaagcttaattgggttctttaatgagaaatttttagATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCCGATTATTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGAT

Basic information

species Glycine max
transcript GLYMA09G08370.1
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166945|gb|HO010384.1|HO010384
EST:     ACGCTGGTGCAAGCTCAAGCAATTCCCGTTATTCTCTCGGGGCGGCATGC                         ATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCC
genomic: ACGCTGGTGCAAGCTCAAGCAATTCCCGTTATTCTCTCGGGGCGGCATGCgtatcctttt ... aaatttttagATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCC
EST: gi|193402332|gb|FK368950.1|FK368950
EST:     GTGCAAGCTCAAGCAATTCCCGTTATTCTCTCGGGGCGGCATGC                         ATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCC
genomic: GTGCAAGCTCAAGCAATTCCCGTTATTCTCTCGGGGCGGCATGCgtatcctttt ... aaatttttagATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgagttttttttttttgaaaagcttaattgggttctttaatgagaaatttttagATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCCGATTATTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGAT
 ttctttaat  putative branch site 
                                                ttttt  putative PPT
     ttttttttttttgaaa  TA-rich tract