1 5' 3' | 2 5' 3' | 3 5' 3' |
...gccatccctgtcttcatgtttttcatagttaccaagatgaaacttttgaccacatttttttattcttcttgatttgcttttctgtgtgggctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCAGGGAAAGGCCACCATGTAACTTATTCCGTGCAGGAGGAGGAGGGATGG
species | Glycine max |
transcript | GLYMA09G07930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAG AGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCEST: gi|192313012|gb|FK004644.1|FK004644
genomic: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAGgtaacttctg ... ctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGC
EST: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAG AGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCEST: gi|192313011|gb|FK004643.1|FK004643
genomic: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAGgtaacttctg ... ctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGC
EST: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAG AGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGC
genomic: TTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAGgtaacttctg ... ctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGC
ttgaccacatttttttattcttcttgatttgcttttctgtgtgggctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCAGGGAAAGGCCACCATGTAACTTATTCCGTGCAGGAGGAGGAGGGATGG
atttttttattcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccatccctgtcttcatgtttttcatagttaccaagatgaaacttttgaccacatttttttattcttcttgatttgcttttctgtgtgggctgaacgcagAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCAGGGAAAGGCCACCATGTAACTTATTCCGTGCAGGAGGAGGAGGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -ccctgtc
- - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - tgaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg