Sequence
atgc intronic sequence ATGC exonic sequence...actgtgtttgtgtgtgtgtatcataatttattcatgttgatcattacgtggttcattgttttaacatgcatgcatgctatgatgaattttgacccaccagAGCCTTAGAAGAACTGAATGCAAACTTCAACAAGCTGAGCAAGCTTCCAGACACAATAGGGTTTGAGCTCGTAAACCTAAAGAAGCTCTCAGTGAACTCC
Basic information
species | Glycine max |
transcript | GLYMA09G06920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G06920.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0052g00390.t01 (Vitis vinifera), 3'ss of exon 2
actgtgtttgtgtgtgtgtatcataatttattcatgttgatcattacgtggttcattgttttaacatgcatgcatgctatgatgaattt-tgacccac---cagAGCCTTAGAAGAACTGAATGCAAACTTCAACAAGCTGAGCAAGCTTCCAGACACAATAGGGTTTGAGCTCGTAAACCTAAAGAAGCTCTCAGTGAACTCC
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---tcctttaagatcaaatgttattgctctcatttgatggattaaatgtgatt-attagtacaagtgattaaaattccatcaaatatttgtggttctcacacagGTCATTGGAGGAACTGAATGCCAACTTCAACCAGCTGACCATGCTACCAGACACCATAGGATTTGAGCTATTGAACATCAAAAAGCTCTCAGTGAACTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgtggttcattgttttaacatgcatgcatgctatgatgaattttgacccaccagAGCCTTAGAAGAACTGAATGCAAACTTCAACAAGCTGAGCAAGCTTCCAGACACAATAGGGTTTGAGCTCGTAAACCTAAAGAAGCTCTCAGTGAACTCC
attgttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actgtgtttgtgtgtgtgtatcataatttattcatgttgatcattacgtggttcattgttttaacatgcatgcatgctatgatgaattttgacccaccagAGCCTTAGAAGAACTGAATGCAAACTTCAACAAGCTGAGCAAGCTTCCAGACACAATAGGGTTTGAGCTCGTAAACCTAAAGAAGCTCTCAGTGAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - tgtttgt
- - - - -gtgtgtg
- - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg