1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaagcataagaagaaattatttttttacctttgcaagttggtttatttgttctatccatctctctctcccctgacttatgcatgttgtatggatggtagGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
species | Glycine max |
transcript | GLYMA09G03660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAATEST: gi|7692845|gb|AW760944.1|AW760944
genomic: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggatggtagGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGAACGCTGTANACCACTTAAGGCTGAAAATGCTGTTGTCAAGGGTCAAG -TTGGTAATGCAAAC
genomic: GGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGT-AAGgtgggttttg ... tggatggtagGTTGTTAATGCAAAC
atttgttctatccatctctctctcccctgacttatgcatgttgtatggatggtagGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
ccctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagcataagaagaaattatttttttacctttgcaagttggtttatttgttctatccatctctctctcccctgacttatgcatgttgtatggatggtagGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - aagaagaa
- - - - - - - - - - - - - - cctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt