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...ttagaatgcctatgaagtgtaactggggtctggaggatattgcagaactaatttcatttgtttttctttagaagttgagtaattggaaggtcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGC
species | Glycine max |
transcript | GLYMA09G02830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAA GTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGEST: gi|7692451|gb|AW760557.1|AW760557
genomic: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTG
EST: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAA GTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGEST: gi|151394014|gb|EV263885.1|EV263885
genomic: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTG
EST: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAA GTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGEST: gi|120495547|gb|EH223714.1|EH223714
genomic: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTG
EST: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAA GTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTG
aactaatttcatttgtttttctttagaagttgagtaattggaaggtcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGC
aactaat putative branch site (score: 2)
tcttttac putative PPT
atttcatttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagaatgcctatgaagtgtaactggggtctggaggatattgcagaactaatttcatttgtttttctttagaagttgagtaattggaaggtcttttacagGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -gaatgcc
- - - - - - tgaagtg
- - - - - - - - - - - - - - - tggagga
- - - - - - - - - - - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaagg