1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatggtttgagaacattagttgggttggtggactagaattttgttgtgtggtgcggagtaggatgtgtctcaatgatggttttttatgcttgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCTGGATGCGCCCAGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
species | Glycine max |
transcript | GLYMA09G02160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|10233582|gb|BE802470.1|BE802470
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|6666649|gb|AW278108.1|AW278108
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTAGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|37994918|gb|CF806507.1|CF806507
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|209719122|gb|BW659399.1|BW659399
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|37995446|gb|CF807035.1|CF807035
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATCCTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|209699773|gb|BW652118.1|BW652118
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCEST: gi|10847957|gb|BF070535.1|BF070535
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
EST: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGATATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
genomic: TCAAGAGTTTCAATAGTACTGCTGACACCATCACCACCCTTGCTGCTCAGgtatccatcc ... tgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGC
gtgtggtgcggagtaggatgtgtctcaatgatggttttttatgcttgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCTGGATGCGCCCAGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
cttgttt CT-rich tract
ttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggtttgagaacattagttgggttggtggactagaattttgttgtgtggtgcggagtaggatgtgtctcaatgatggttttttatgcttgtttgacagGTTGGGCTTGGAGATACTTCCGGTGGTGACAGTCCGAATGACCACTATTGCTGGATGCGCCCAGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- tggtttg
- - - - - - - - - - -gggttgg
- - - - - - - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaatg