1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taagggcaactttagtttacatgattaatgttttactataatgtggccattaacatgatatttccattttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
species | Glycine max |
transcript | GLYMA09G02070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATEST: gi|207708576|gb|GD691910.1|GD691910
genomic: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
gccattaacatgatatttccattttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
cattaac putative branch site (score: 2)
ttccctgtt putative PPT
atgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagggcaactttagtttacatgattaatgttttactataatgtggccattaacatgatatttccattttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
- - - - - - - - -tacatga
- - - - - - - - - - - - - - - - - - - - atgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg