1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attattttgtttgttttttttttcttggatcttggcttcttgtgccagcgaagtcacccccacccattcttatttgatgtttgtgtggtctatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAAATAGTGAATCTGAACCAGTGTCTGAAGCCTGTGCGCAGTTGACTC
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG CAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATEST: gi|213599253|gb|DB962290.1|DB962290
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... tatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTAT
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG CAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATEST: gi|18039695|gb|BM307989.1|BM307989
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... tatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTAT
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTG-AG-G-AG AAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTAT
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... tatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTAT
cagcgaagtcacccccacccattcttatttgatgtttgtgtggtctatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAAATAGTGAATCTGAACCAGTGTCTGAAGCCTGTGCGCAGTTGACTC
atttgat putative branch site (score: 5)
tctatct putative PPT
attcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattttgtttgttttttttttcttggatcttggcttcttgtgccagcgaagtcacccccacccattcttatttgatgtttgtgtggtctatctaacagCAGATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAAATAGTGAATCTGAACCAGTGTCTGAAGCCTGTGCGCAGTTGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - -tgtttgt
- - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg