1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaacgctcgttttcgaatccgattgcttttctttcttcgtcttcttcttcttcttcttcttttgagatttaactttttttcttcgatcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTGGACCTGCGGGCATTATGAAGTGCAAATACGTTGAGCTCACCTCTGAATA
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAA-GGTGEST: gi|5342441|gb|AI794725.1|AI794725
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
EST: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTGEST: gi|15204845|gb|BI427613.1|BI427613
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
EST: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
cttcttcttcttcttcttcttttgagatttaactttttttcttcgatcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTGGACCTGCGGGCATTATGAAGTGCAAATACGTTGAGCTCACCTCTGAATA
atttaac putative branch site (score: 3)
ctttttttcttcgatc CT-rich tract
ttttgagatttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgctcgttttcgaatccgattgcttttctttcttcgtcttcttcttcttcttcttcttttgagatttaactttttttcttcgatcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTGGACCTGCGGGCATTATGAAGTGCAAATACGTTGAGCTCACCTCTGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA