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...ccttgcaatgctggatttaatttaactgttctccacccccaaaggtatatacttttcaactgttgtttatgctcacctggtcccccttatccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAAATATTGGGGGGCATCTAGATCAATTCATGGCTCGG
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAEST: gi|207711712|gb|GD694188.1|GD694188
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAEST: gi|151401621|gb|EV271434.1|EV271434
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAEST: gi|15000262|gb|BI321076.1|BI321076
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAEST: gi|193641551|gb|FK592377.1|FK592377
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
tatatacttttcaactgttgtttatgctcacctggtcccccttatccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAAATATTGGGGGGCATCTAGATCAATTCATGGCTCGG
tgctcac putative branch site (score: 2)
tcccccttatccattt putative PPT
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgcaatgctggatttaatttaactgttctccacccccaaaggtatatacttttcaactgttgtttatgctcacctggtcccccttatccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATAAATATTGGGGGGCATCTAGATCAATTCATGGCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
ccttgca
- - - - tgctgga
- - - - - - - - - - - - - - - ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctc