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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctctctacttcctctttcacctcccaatacccacaacttagtatttagactatactcacttttgtttgtagggatgccatatccccaaaatttggaaactgcaaaagAGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAATTTTAGATGGCACGCCTTGTGTAG

Basic information

species Glycine max
transcript GLYMA09G00500.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00500.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S345_43V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------gttctctctacttcctctttcacctcccaatacccacaacttagtatttagactatactcac----ttttgtt----tgtagggatgccatatccccaaaatttggaaactgcaaaagAGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAATTTTAGATGGCACGCCTTGTGTAG
                  | ||||   || |    |       |    ||       ||| |  | ||  ||     |||    || ||||    |||||| ||||| || || |||||||| |||||||| ||||||||||||  ||| ||  |||| |  ||||| || || || |||||||| ||  | || ||  |           
cgctaaatagtactggatgatctcataaccttggatactgtaccgtggtagtgcttgcttggagtataagctgagtgcacggctttatgttgttatgtagGTATGCCGTACCCACAAAATTTTGAAACTGCCAAAGAGGTGGAATCTATCGTGCGAGACAGTGGTGCTGTGCCAGCCACCATTGCGATCCTCGACGGTGC-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314472|gb|FK008092.1|FK008092
EST:     ATCACTGGGTCGTGCTGTTGTTGCTCTTGAATCTACCATTATTTCGCATG                         AGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAA
genomic: ATCACTGGGTCGTGCTGTTGTTGCTCTTGAATCTACCATTATTTCGCATGgttctctcta ... actgcaaaagAGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAA
EST: gi|192314473|gb|FK008093.1|FK008093
EST:     ATCACTGGGTCGTGCTGTTGTTGCTCTTGAATCTACCATTATTTCGCATG                         AGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAA
genomic: ATCACTGGGTCGTGCTGTTGTTGCTCTTGAATCTACCATTATTTCGCATGgttctctcta ... actgcaaaagAGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcacttttgtttgtagggatgccatatccccaaaatttggaaactgcaaaagAGGTGGAACGTATTGTAAGAGAGAACGGTGCAGTTCCTGCAACCATTGCAATTTTAGATGGCACGCCTTGTGTAG
 tactcac  putative branch site (score: 1)
                                  aaaattt  TA-rich tract