Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG

Basic information

species Glycine max
transcript GLYMA08G47790.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47790.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 2
gtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
                                                          |   ||| | | |   ||||    ||||| |   || || |  |||||    | |   ||   | ||||    | | | | |   | ||    ||| | ||| || ||||||||||| ||||| || || ||||| || |||||||||||||| ||||||||
----------------------------------------------------------ttttgaactgata--tgattgtattttcacatgtttctttt--gttat----tttcatttattagttgcaatctcttgcaat--gagctat--tctatttatatggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412865|gb|EV282677.1|EV282677
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTACCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|17153408|gb|BM143341.1|BM143341
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|213587880|gb|DB959704.1|DB959704
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|26059043|gb|CA801957.1|CA801957
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|18692732|gb|BM521580.1|BM521580
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|6481766|gb|AW201037.1|AW201037
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|213591047|gb|DB973788.1|DB973788
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGCCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254315550|gb|GR825359.1|GR825359
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|6133795|gb|AW132188.1|AW132188
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|19453272|gb|BM954682.1|BM954682
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|9439831|gb|BE440344.1|BE440344
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         AGTTGTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254346140|gb|GR859753.1|GR859753
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254336110|gb|GR841435.1|GR841435
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|8283342|gb|BE020903.1|BE020903
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|5126502|gb|AI748238.1|AI748238
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|16106060|gb|BI893800.1|BI893800
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|15813619|gb|BI785894.1|BI785894
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|9565717|gb|BE475226.1|BE475226
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|11688467|gb|BF596143.1|BF596143
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|18039782|gb|BM308076.1|BM308076
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|19936998|gb|BQ081103.1|BQ081103
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|41146374|gb|CK606585.1|CK606585
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|192309107|gb|FG999390.1|FG999390
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|16347482|gb|BI973077.1|BI973077
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|19271012|gb|BM887268.1|BM887268
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|209710574|gb|BW676526.1|BW676526
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|209718567|gb|BW662685.1|BW662685
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254326716|gb|GR832868.1|GR832868
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|16996699|gb|BM086071.1|BM086071
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|17022331|gb|BM093365.1|BM093365
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254322565|gb|GR837979.1|GR837979
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|22540587|gb|BU090430.1|BU090430
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
                       ttctaaa  putative branch site (score: 2)
               ttatagtattctaaa  TA-rich tract