1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttttactttgtgcttttgttttggaatttggttcttcaatctattatgaatgctgaagtggtgaatgaaatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG
species | Glycine max |
transcript | GLYMA08G46850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|208151829|gb|GD948262.1|GD948262
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|209719538|gb|BW669175.1|BW669175
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|208049557|gb|GD848460.1|GD848460
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGEST: gi|193553669|gb|FK506260.1|FK506260
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTG
EST: GATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|298171760|gb|HO021352.1|HO021352
genomic: GATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193363286|gb|FK325774.1|FK325774
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: GGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193722461|gb|FK662121.1|FK662121
genomic: GGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CTCCTCCTTATGACAAGACCAAGAGGATGGTTGTTCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|209719537|gb|BW669174.1|BW669174
genomic: CTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|298173139|gb|HO020123.1|HO020123
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCCGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|298188599|gb|HO035292.1|HO035292
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGCGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|298179434|gb|HO027905.1|HO027905
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|298195963|gb|HO044354.1|HO044354
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|58024885|gb|CX711626.1|CX711626
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|151394249|gb|EV264120.1|EV264120
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193701139|gb|FK638652.1|FK638652
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|213615010|gb|DB957048.1|DB957048
genomic: CCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|7041647|gb|AW471599.1|AW471599
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACATATACTGTCATCTGGGCCAATTGTCEST: gi|193633372|gb|FK582944.1|FK582944
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTTCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAEST: gi|15813016|gb|BI785291.1|BI785291
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCA
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193728150|gb|FK667650.1|FK667650
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: TATGACAAGACCTAAGAGGATGGTTGT-CCTGATGCCCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193558701|gb|FK512916.1|FK512916
genomic: TATGACAAGACC-AAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCCCCTCCTTATGACAAGACCAAGAGGATGGTTGCCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|208205382|gb|GE008313.1|GE008313
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|5057451|gb|AI735927.1|AI735927
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|41146366|gb|CK606577.1|CK606577
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|193725749|gb|FK660127.1|FK660127
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: TATGACAAGACCAAGAGGATGGTTGTCCCTGATGCCCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|13790079|gb|BG652670.1|BG652670
genomic: TATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|7042684|gb|AW472578.1|AW472578
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|208304697|gb|GE103546.1|GE103546
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: TCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCEST: gi|9899592|gb|BE608560.1|BE608560
genomic: TCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGTAGGGACACAGATACTGTCATCTTGGCCAATTGTCEST: gi|213599333|gb|DB972275.1|DB972275
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAEST: gi|192311953|gb|FK004556.1|FK004556
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCA
EST: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAA GGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
genomic: CCTCCTCCTTATGACAAGACCAAGAGGATGGTTGTCCCTGATGCTCTCAAgtgagtttta ... aatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTC
gaatttggttcttcaatctattatgaatgctgaagtggtgaatgaaatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG
tgaatgaaatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttactttgtgcttttgttttggaatttggttcttcaatctattatgaatgctgaagtggtgaatgaaatttattagGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCATCTGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA