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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGT

Basic information

species Glycine max
transcript GLYMA08G46570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46570.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os04g30800.1 (Oryza sativa), 3'ss of exon 2
--------------------------gtta-gtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaag---agctgattgtgtaacttttg--catactttttgaaaatacacttatgcattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGT
                          |||    ||  ||||   |  | ||  |||||  | |     |  |    ||   |  |  | | |  |  ||      |  || | ||| || ||  || |||||||     |    |||| |    | ||||| |||||||| |||||| | ||| |||| |||||||| || ||||||||||| |||||  ||||| | ||  | ||  |||| ||||| || || || |
gtacttcatcaaatcaacttcttgaagttgtagaaaatataagcttccaatgataatttatctcagcttttaggtctgaattgatatattcccctttagttttattacttctataagttatgaccaaacttttttggggt----ttatccg--aattagGTGATGTGGACGTTTTCCATTTATCTGGAGGCTGTTGCAATTCTTCCTCAACTTGTACTACTACAGCGTACACGGAACGTTGATAATTTAACAGGGCAAT

upper sequence: GLYMA08G46570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0029g00180.t01 (Vitis vinifera), 3'ss of exon 2
gttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgca------ttgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGT
                      || | |  |  |    |  | ||||||  |  || |          ||    || ||| | | | ||||   ||  ||| | ||||||    || ||      ||||  ||||  ||||| |||||||| | || |||||||||||||| |||||||||||||| ||  | || || || ||||||||||||||||| ||||| ||||| |
----------------------atcgaatattctccttttttggaaacaaatatttat----------cagtgtctcatttttttattttt-tttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208154619|gb|GD952746.1|GD952746
EST:     AAATTCACATTGTAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
genomic: AAATTCACATTG-AAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
EST: gi|192306206|gb|FG996834.1|FG996834
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7028432|gb|AW458215.1|AW458215
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAAGAG                         GTCATGTGGACATTTTCCCTGTATTTGGGAGCTGGTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7693494|gb|AW761586.1|AW761586
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAA                         GTCATGTGGACATTATCCCTGTATTTGGAAGCTGTTGCTATACTTTCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|193442863|gb|FK408357.1|FK408357
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTACATGTGGACATTTTCCCTGTATTTGGAAGC
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGT-CATGTGGACATTTTCCCTGTATTTGGAAGC
EST: gi|6566143|gb|AW233782.1|AW233782
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|209715073|gb|BW677116.1|BW677116
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGNAATTCACATTGAAGGAG                         GTCATGT-GACANCTTNCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACA-TTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
EST: gi|9564202|gb|BE473711.1|BE473711
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|31561500|gb|CD487338.1|CD487338
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|10252890|gb|BE820656.1|BE820656
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|192325724|gb|FK015081.1|FK015081
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|24136162|gb|BU926672.1|BU926672
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|10232336|gb|BE801224.1|BE801224
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTTCA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCT-CA
EST: gi|192306207|gb|FG996835.1|FG996835
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|209715072|gb|BW677115.1|BW677115
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|27424798|gb|CA936318.1|CA936318
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|208059246|gb|GD859474.1|GD859474
EST:     AAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: AAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|13252025|gb|BG362928.1|BG362928
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7147282|gb|AW509204.1|AW509204
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|11412647|gb|BF424658.1|BF424658
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTNTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|151401246|gb|EV271060.1|EV271060
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7588285|gb|AW704084.1|AW704084
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGT
        gtgtaac  putative branch site (score: 3)
                     atactttttgaaaata  TA-rich tract