1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtttaatctttcttttcccattcatgattccttctttctgtctttgcgtgcatttgtgttctgatttgggtttcatggggttatgcatcttgcagCAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATG
species | Glycine max |
transcript | GLYMA08G46170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGACATCATCTCATTA CAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAEST: gi|19348833|gb|BM893365.1|BM893365
genomic: CTGGACATCATCTCATTAgtatgtttaa ... catcttgcagCAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAA
EST: TCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA CAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAA
genomic: TCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTAgtatgtttaa ... catcttgcagCAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAA
tctttgcgtgcatttgtgttctgatttgggtttcatggggttatgcatcttgcagCAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATG
ttctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttaatctttcttttcccattcatgattccttctttctgtctttgcgtgcatttgtgttctgatttgggtttcatggggttatgcatcttgcagCAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG