1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagattgtatgctaaactagttgaagggaaaatggcgtggaagtaatcttcaggctattttcaatataactcaaaagtgatatctttgttggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGG
species | Glycine max |
transcript | GLYMA08G46090.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAG GGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGEST: gi|16996514|gb|BM085886.1|BM085886
genomic: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGgtttgccatc ... ggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTG
EST: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAG GGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGEST: gi|254338207|gb|GR845563.1|GR845563
genomic: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGgtttgccatc ... ggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTG
EST: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAG GGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTG
genomic: TGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGgtttgccatc ... ggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTG
atcttcaggctattttcaatataactcaaaagtgatatctttgttggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGG
atataac putative branch site (score: 3)
tattttcaatataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagattgtatgctaaactagttgaagggaaaatggcgtggaagtaatcttcaggctattttcaatataactcaaaagtgatatctttgttggaagtgcagGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGG
- - - gtatgct
- - - - - - - - - - - - - - - - -ggcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa